PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g036090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HB-other
Protein Properties Length: 319aa    MW: 36482.8 Da    PI: 10.2289
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g036090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.61.6e-11553856
                    -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++ q+++Le+++ +++yp+ +e+e++ k+lg t + V+ WF+ rR + k
  Csa10g036090.1  5 SPVQVQALEAFYFEQMYPTPKEMEDMGKSLGFTVKEVSGWFKRRRSRGK 53
                    788*******************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.2E-7159IPR001356Homeobox domain
PROSITE profilePS5007112.05155IPR001356Homeobox domain
SuperFamilySSF466893.04E-10356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-11354IPR009057Homeodomain-like
CDDcd000864.38E-8351No hitNo description
PfamPF000464.7E-9553IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKRKSPVQVQ ALEAFYFEQM YPTPKEMEDM GKSLGFTVKE VSGWFKRRRS RGKGMISPAD  60
DVVGAGNPQS YNTSRIRSSR CDFRAGVKKR SSVETRKANC QELFTSQHIL AKIFRKDGPP  120
LGSEFDHLSS GARKASWLGT SSVEQQKQIM TRKRKISELM DHTIQENATV MKHGIGKGLM  180
TVWRVMNPNR RDVSPCVGLL DERATLPQSS ACNPPHQKKK QRQLASILKQ KLLQKRSTEK  240
KRRCINREVE LNKDETQREF KENCELALDR EVFKETCQTT SILVDDEELE MRERQERGNP  300
LTCSCHHSSS GSHGCFLCK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496402e-90AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBankAL1615342e-90AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBankCP0026872e-90CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010497108.10.0PREDICTED: uncharacterized protein LOC104774140, partial
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLR0GUF41e-173R0GUF4_9BRAS; Uncharacterized protein
STRINGAT4G12750.11e-179(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.11e-169Homeodomain-like transcriptional regulator